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Ph.D. research summary in 25 slides
Li Chen
Email: clatfd@gmail.com
Medical Image Analysis, Machine Learning and Computer Vision
Sep. 2016 – Aug. 2021 | Ph.D. in Electrical and Computer Engineering, University of Washington |
Research assistant in Vascular Imaging Lab. Co-advised by Prof. Chun Yuan and Prof. Jenq-Neng Hwang Overall GPA: 3.89 /4.0 | |
Sep. 2012 – June 2016 | B.S. in Electrical Engineering, Fudan University |
Overall GPA: 3.6 /4.0 Ranking: 9% | |
Jan. 2015 – May. 2015 | Exchange Student in National University of Singapore |
Overall GPA: 5.0 /5.0 |
Oct. 2021 – Now | Research Scientist, Philips Research North America |
Ultrasound AI Group, Department of Precision Diagnosis and Image-Guided Therapy, Philips Research Innovation Hub Cambridge MA. Managed by Dr. Alvin Chen.
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May – Aug. 2021 | Research Intern, Genentech, Inc. |
Early Clinical Development Informatics (ECDi) group. Advised by Dr. Reza Negahdar. | |
June – Sep. 2020 | Research Intern, United Imaging Intelligence America |
Medical AI group. Advised by Dr. Shanhui Sun and Terrence Chen. |
Philips Research North America | Oct. 2021 ~ Now |
Research Scientist. Ultrasound AI group. | Cambridge, MA |
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Genentech, Inc. | May ~ Aug. 2021 |
Research intern. Advised by Dr. Reza Negahdar, Early Clinical Development Informatics (ECDi) group. | South San Francisco, CA |
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United Imaging Intelligence America | June ~ Sep. 2020 |
Research Intern. Co-adviced by Dr. Shanhui Sun and Terrence Chen, Medical AI group | Boston, MA |
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Vascular Imaging Lab & Information Processing Lab, University of Washington | Sep. 2016 ~ Aug. 2021 |
Research Assistant. Co-adviced by Prof. Chun Yuan and Prof. Jenq-Neng Hwang | Seattle, WA |
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Medical Imaging Labs, Fudan University | Oct. 2013 ~ June 2016 |
Undergraduate Researcher, Project leader, Adviced by Dr. Huiliang Shang and Dr. Yi Guo | Shanghai, China |
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For Whole Research Experience, Link to Project Journey
Li Chen, Wenjin Liu, Niranjan Balu, et.al. Deep Open Snake Tracker for Vessel Tracing. MICCAI 2021, the 24th International Conference on Medical Image Computing and Computer Assisted Intervention, 2021, Strasbourg, France (September 27th to October 1st). DOI: 10.1007/978-3-030-87231-1_56
Li Chen, Huilin Zhao, Hongjian Jiang, et.al. Domain Adaptive and Fully Automated Carotid Artery Atherosclerotic Lesion Detection using an Artificial Intelligence Approach (LATTE) on 3D MRI. Magnetic resonance in medicine (IF:3.6), 2021, 86 (3), Pages 1662-1673. DOI: 10.1002/MRM.28794
Li Chen, Thomas Hatsukami, Jenq-Neng Hwang, et.al. Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refinement. MICCAI 2020, the 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, 2020, Lima, Peru (October 4 - 8, 2020). DOI: 10.1007/978-3-030-59725-2_8 (pdf) (ppt) (code)
Li Chen, Jie Sun, Gador Canton, et.al. Automated Artery Localization and Vessel Wall Segmentation of Vessel Wall Images using Tracklet Refinement and Polar Conversion . IEEE Access, 2020, 8, Pages 217603-217614. DOI: 10.1109/ACCESS.2020.3040616 (pdf) (code)
Li Chen, Gador Canton, Wenjin Liu, et.al. Fully automated and Robust Analysis Technique for Popliteal Artery Vessel Wall Evaluation (FRAPPE) using Neural Network Models from Standardized Knee MRI. Magnetic resonance in medicine (IF:3.6), 2020, 84, Pages 2147–2160. DOI: 10.1002/mrm.28237 (pdf)
Li Chen, Gaoang Wang, Niranjan Balu, et.al. Simultaneous Intracranial Artery Tracing and Segmentation from Magnetic Resonance Angiography by Joint Optimization from Multiplanar Reformation. Machine Learning and Medical Engineering for Cardiovascular Health and Intravascular Imaging and Computer Assisted Stenting, First International Workshop, MLMECH 2019, and 8th Joint International Workshop, CVII-STENT 2019, Held in Conjunction with MICCAI, 2019, Shenzhen, China (October 13), Pages 201-209. DOI: 10.1007/978-3-030-33327-0 (pdf) (ppt)
Li Chen, Jie Sun, Daniel S Hippe, et.al. Quantitative Assessment of the Intracranial Vasculature in an Older Adult Population using iCafe (intraCranial Artery Feature Extraction). Neurobiology of Aging (IF:4.4), 2019, 79 (July 2019), Pages 59-65. DOI: 10.1016/j.neurobiolaging.2019.02.027 (pdf)
Li Chen, Mahmud Mossa‐Basha, Niranjan Balu, et.al. Development of a quantitative intracranial vascular features extraction tool on 3D MRA using semiautomated open‐curve active contour vessel tracing. Magnetic resonance in medicine (IF:3.9), 2018, 79 (6), Pages 3229-3238. DOI: 10.1002/mrm.26961 (Editor's pick) (pdf) (ppt)
Li Chen, Yanjun Xie, Jie Sun, et.al. 3D intracranial artery segmentation using a convolutional autoencoder. 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2017, Kansas City, MO, USA (November 13 - 16). DOI: 10.1109/BIBM.2017.8217741 (pdf) (ppt)
Li Chen, Yuxi Lian, Yi Guo, et.al. A vascular image registration method based on network structure and circuit simulation. BMC bioinformatics (IF:2.5), 2017, 18 (1), Pages 229. DOI: 10.1186/s12859-017-1649-1 (pdf)
For Whole Publications, Link to Curriculum Vitae
Computer Languages Python, C/C++, Java
Image processing OpenCV, Matlab, ITK
Machine learning Tensorflow, Keras, PyTorch
Web development php, HTML, js, MySQL
2019, 2020 | Magna Cum Laude Merit Award, ISMRM |
2018 | Outstanding Research Award, OCSMRM |
2015 | Mathematical Contest in Modeling 2015 (Meritorious Winner, top 10%) |
2009-2015 | Six consecutive years of Shu Ping Scholarship(top 3%) |
2013-2014 | Two consecutive years of Fudan university scholarship(top 15%) |
Technical director of Fudan Students Union, 2014
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