Note for freesurfer on CentOS


export FREESURFER_HOME=/home/cl/Desktop/freesurfer/

source $FREESURFER_HOME/SetUpFreeSurfer.sh


recon-all -i /mnt/hgfs/F/t1/IMG-0001-00001.dcm -s t1

freeview -v  /home/cl/Desktop/freesurfer/subjects/t1/mri/orig/001.mgz 


freeview -v \

    mp2/mri/T1.mgz \

    mp2/mri/wm.mgz \

    mp2/mri/brainmask.mgz \

    mp2/mri/aseg.mgz:colormap=lut:opacity=0.2 \

    -f \

    mp2/surf/lh.white:edgecolor=blue \

    mp2/surf/lh.pial:edgecolor=red \

    mp2/surf/rh.white:edgecolor=blue \

    mp2/surf/rh.pial:edgecolor=red