Note for freesurfer on CentOS clatfd

Note for freesurfer on CentOS

Posted on 2017-03-31 by admin 740 0

export FREESURFER_HOME=/home/cl/Desktop/freesurfer/

source $FREESURFER_HOME/SetUpFreeSurfer.sh

recon-all -i /mnt/hgfs/F/t1/IMG-0001-00001.dcm -s t1

freeview -v /home/cl/Desktop/freesurfer/subjects/t1/mri/orig/001.mgz

freeview -v \

mp2/mri/T1.mgz \

mp2/mri/wm.mgz \

mp2/mri/brainmask.mgz \

mp2/mri/aseg.mgz:colormap=lut:opacity=0.2 \

-f \

mp2/surf/lh.white:edgecolor=blue \

mp2/surf/lh.pial:edgecolor=red \

mp2/surf/rh.white:edgecolor=blue \

mp2/surf/rh.pial:edgecolor=red

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